Getting started
Installation Instructions for Users
User Documentation
BIDS and BIDS App standards
Commandline Usage
Outputs of MIALSRTK BIDS App
API Documentation
Command-line interface (CLI) module
Preprocess module
Postprocess module
Reconstruction module
Utility (utils) module
Pipelines module
About MIALSRTK
BSD 3-Clause License
Citing
Changes
Contributing
Contributors
Medical Image Analysis Laboratory Super-Resolution Toolkit
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
F
|
I
|
M
|
O
|
P
|
R
|
S
A
AnatomicalPipeline (class in pymialsrtk.pipelines.anatomical.srr)
B
BrainExtraction (class in pymialsrtk.interfaces.preprocess)
BrainExtractionInputSpec (class in pymialsrtk.interfaces.preprocess)
BrainExtractionOutputSpec (class in pymialsrtk.interfaces.preprocess)
BtkNLMDenoising (class in pymialsrtk.interfaces.preprocess)
BtkNLMDenoisingInputSpec (class in pymialsrtk.interfaces.preprocess)
BtkNLMDenoisingOutputSpec (class in pymialsrtk.interfaces.preprocess)
C
create_docker_cmd() (in module pymialsrtk.cli.mialsuperresolutiontoolkit_bidsapp)
create_workflow() (pymialsrtk.pipelines.anatomical.srr.AnatomicalPipeline method)
F
FilenamesGeneration (class in pymialsrtk.interfaces.postprocess)
FilenamesGenerationInputSpec (class in pymialsrtk.interfaces.postprocess)
FilenamesGenerationOutputSpec (class in pymialsrtk.interfaces.postprocess)
FilteringByRunid (class in pymialsrtk.interfaces.preprocess)
FilteringByRunidInputSpec (class in pymialsrtk.interfaces.preprocess)
FilteringByRunidOutputSpec (class in pymialsrtk.interfaces.preprocess)
I
input_spec (pymialsrtk.interfaces.postprocess.FilenamesGeneration attribute)
(pymialsrtk.interfaces.postprocess.MialsrtkN4BiasFieldCorrection attribute)
(pymialsrtk.interfaces.postprocess.MialsrtkRefineHRMaskByIntersection attribute)
(pymialsrtk.interfaces.preprocess.BrainExtraction attribute)
(pymialsrtk.interfaces.preprocess.BtkNLMDenoising attribute)
(pymialsrtk.interfaces.preprocess.FilteringByRunid attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkCorrectSliceIntensity attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkHistogramNormalization attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkIntensityStandardization attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkMaskImage attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkSliceBySliceCorrectBiasField attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkSliceBySliceN4BiasFieldCorrection attribute)
(pymialsrtk.interfaces.preprocess.MultipleBrainExtraction attribute)
(pymialsrtk.interfaces.preprocess.MultipleBtkNLMDenoising attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkCorrectSliceIntensity attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkMaskImage attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkSliceBySliceCorrectBiasField attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkSliceBySliceN4BiasFieldCorrection attribute)
(pymialsrtk.interfaces.preprocess.StacksOrdering attribute)
(pymialsrtk.interfaces.reconstruction.MialsrtkImageReconstruction attribute)
(pymialsrtk.interfaces.reconstruction.MialsrtkTVSuperResolution attribute)
M
main() (in module pymialsrtk.cli.mialsuperresolutiontoolkit_bidsapp)
MialsrtkCorrectSliceIntensity (class in pymialsrtk.interfaces.preprocess)
MialsrtkCorrectSliceIntensityInputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkCorrectSliceIntensityOutputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkHistogramNormalization (class in pymialsrtk.interfaces.preprocess)
MialsrtkHistogramNormalizationInputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkHistogramNormalizationOutputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkImageReconstruction (class in pymialsrtk.interfaces.reconstruction)
MialsrtkImageReconstructionInputSpec (class in pymialsrtk.interfaces.reconstruction)
MialsrtkImageReconstructionOutputSpec (class in pymialsrtk.interfaces.reconstruction)
MialsrtkIntensityStandardization (class in pymialsrtk.interfaces.preprocess)
MialsrtkIntensityStandardizationInputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkIntensityStandardizationOutputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkMaskImage (class in pymialsrtk.interfaces.preprocess)
MialsrtkMaskImageInputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkMaskImageOutputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkN4BiasFieldCorrection (class in pymialsrtk.interfaces.postprocess)
MialsrtkN4BiasFieldCorrectionInputSpec (class in pymialsrtk.interfaces.postprocess)
MialsrtkN4BiasFieldCorrectionOutputSpec (class in pymialsrtk.interfaces.postprocess)
MialsrtkRefineHRMaskByIntersection (class in pymialsrtk.interfaces.postprocess)
MialsrtkRefineHRMaskByIntersectionInputSpec (class in pymialsrtk.interfaces.postprocess)
MialsrtkRefineHRMaskByIntersectionOutputSpec (class in pymialsrtk.interfaces.postprocess)
MialsrtkSliceBySliceCorrectBiasField (class in pymialsrtk.interfaces.preprocess)
MialsrtkSliceBySliceCorrectBiasFieldInputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkSliceBySliceCorrectBiasFieldOutputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkSliceBySliceN4BiasFieldCorrection (class in pymialsrtk.interfaces.preprocess)
MialsrtkSliceBySliceN4BiasFieldCorrectionInputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkSliceBySliceN4BiasFieldCorrectionOutputSpec (class in pymialsrtk.interfaces.preprocess)
MialsrtkTVSuperResolution (class in pymialsrtk.interfaces.reconstruction)
MialsrtkTVSuperResolutionInputSpec (class in pymialsrtk.interfaces.reconstruction)
MialsrtkTVSuperResolutionOutputSpec (class in pymialsrtk.interfaces.reconstruction)
MultipleBrainExtraction (class in pymialsrtk.interfaces.preprocess)
MultipleBrainExtractionInputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleBrainExtractionOutputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleBtkNLMDenoising (class in pymialsrtk.interfaces.preprocess)
MultipleBtkNLMDenoisingInputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleBtkNLMDenoisingOutputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkCorrectSliceIntensity (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkCorrectSliceIntensityInputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkCorrectSliceIntensityOutputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkMaskImage (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkMaskImageInputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkMaskImageOutputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkSliceBySliceCorrectBiasField (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkSliceBySliceCorrectBiasFieldInputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkSliceBySliceCorrectBiasFieldOutputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkSliceBySliceN4BiasFieldCorrection (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkSliceBySliceN4BiasFieldCorrectionInputSpec (class in pymialsrtk.interfaces.preprocess)
MultipleMialsrtkSliceBySliceN4BiasFieldCorrectionOutputSpec (class in pymialsrtk.interfaces.preprocess)
O
output_spec (pymialsrtk.interfaces.postprocess.FilenamesGeneration attribute)
(pymialsrtk.interfaces.postprocess.MialsrtkN4BiasFieldCorrection attribute)
(pymialsrtk.interfaces.postprocess.MialsrtkRefineHRMaskByIntersection attribute)
(pymialsrtk.interfaces.preprocess.BrainExtraction attribute)
(pymialsrtk.interfaces.preprocess.BtkNLMDenoising attribute)
(pymialsrtk.interfaces.preprocess.FilteringByRunid attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkCorrectSliceIntensity attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkHistogramNormalization attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkIntensityStandardization attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkMaskImage attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkSliceBySliceCorrectBiasField attribute)
(pymialsrtk.interfaces.preprocess.MialsrtkSliceBySliceN4BiasFieldCorrection attribute)
(pymialsrtk.interfaces.preprocess.MultipleBrainExtraction attribute)
(pymialsrtk.interfaces.preprocess.MultipleBtkNLMDenoising attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkCorrectSliceIntensity attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkMaskImage attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkSliceBySliceCorrectBiasField attribute)
(pymialsrtk.interfaces.preprocess.MultipleMialsrtkSliceBySliceN4BiasFieldCorrection attribute)
(pymialsrtk.interfaces.preprocess.StacksOrdering attribute)
(pymialsrtk.interfaces.reconstruction.MialsrtkImageReconstruction attribute)
(pymialsrtk.interfaces.reconstruction.MialsrtkTVSuperResolution attribute)
P
pymialsrtk.cli.mialsuperresolutiontoolkit_bidsapp (module)
pymialsrtk.interfaces.postprocess (module)
pymialsrtk.interfaces.preprocess (module)
pymialsrtk.interfaces.reconstruction (module)
pymialsrtk.interfaces.utils (module)
pymialsrtk.pipelines.anatomical.srr (module)
R
reorder_by_run_ids() (in module pymialsrtk.interfaces.utils)
run() (in module pymialsrtk.interfaces.utils)
(pymialsrtk.pipelines.anatomical.srr.AnatomicalPipeline method)
S
sort_ascending() (in module pymialsrtk.interfaces.utils)
StacksOrdering (class in pymialsrtk.interfaces.preprocess)
StacksOrderingInputSpec (class in pymialsrtk.interfaces.preprocess)
StacksOrderingOutputSpec (class in pymialsrtk.interfaces.preprocess)
Read the Docs
v: v2.0.0
Versions
latest
v2.0.0
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.