pymialsrtk.workflows.postproc_stage module

Module for the postprocessing stage of the super-resolution reconstruction pipeline.

pymialsrtk.workflows.postproc_stage.convert_ga(ga)

Convert the gestational age to integers between 21 and 38.

This is in order to be able to load the corresponding template using the spatio-temporal atlas of Gholipour et al.

pymialsrtk.workflows.postproc_stage.create_postproc_stage(p_ga, p_do_anat_orientation=False, p_do_reconstruct_labels=False, p_verbose=False, name='postproc_stage')

Create a SR preprocessing workflow.

Parameters

• name (string) – Name of workflow (default: “preproc_stage”)

• p_ga (integer) – Subject’s gestational age in weeks

• p_do_anat_orientation (boolean) – Whether the alignement to template should be performed

• p_do_reconstruct_labels (boolean) – Whether the reconstruction of LR labelmaps should be performed

• p_verbose (boolean) – Whether verbosity is enabled

Inputs

• input_sdi (pathlike object or string representing a file) – Input SDI image

• input_image (pathlike object or string representing a file) – Input T2w image

• input_mask (pathlike object or string representing a file) – Input mask image

• input_labelmap (pathlike object or string representing a file) – Input labelmap image (optional)

Outputs

• output_image (pathlike object or string representing a file) – Postprocessed image

• output_mask (pathlike object or string representing a file) – Postprocessed mask

• output_labelmap (pathlike object or string representing a file) – Postprocessed labelmap